CZ:Technical Team: Difference between revisions

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{{seealso|CZ:Technical|CZ:Technical Help}}
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__NOTOC__
{{Workgroup|group=Technical}}
Citizendium's [[CZ:Technical|technical]] staff are responsible for making changes and updates to the [[wiki]] software and the [[server]]s that host the project.
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| align="center" style="border: 1px solid darkblue; background-color:lightblue; margin-bottom: 3px;"| <big>'''Technical Team Workgroup tasks'''</big>
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|'''''[https://nourlyet Suggestions for this page as recommended by Larry Sanger]'''''
Still to do:


'''''(i)''''' a welcome message aimed at new editors in your area, and perhaps
{{CZ:Personnel}}


'''''(ii)''''' a link to a version of  [[Citizendium_Pilot:Recruitment_Letter]] adapted for your discipline.  And whatever else seems helpful!
==Resource list==
::The most up to date version of the recruitment letter can been [[Citizendium_Pilot:Recruitment_Letter#Version_2_for_Biological_.2F_Health_Sciences|seen here]].
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|align="center" colspan="4"|'''<big>Resources</big>'''
|width=33% rowspan=2|__TOC__
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|-
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|align="center"|Internal resources
{|
|align="center"|Development Resources
| align="center" style="border: 1px solid darkblue; background-color:lightblue; margin-bottom: 3px;"| <big>'''How you can help'''</big>
|align="center"|Mediawiki Resources
|align="center"|&nbsp;
|-
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|'''Launch workgroup tagging of articles''' 
|width="25%" valign="top"|
Any article related to the Biology Workgroup should be placed in the category <nowiki>[[Category:Biology Workgroup]]</nowiki>".  This means that we think the biology workgroup will be one of the main groups to manage this article. Note, the tag is *not* "<nowiki>[[Category:Biology]]</nowiki>"; that's because we're attaching the article to its *management*.
===Internal List===
*[[User:Citizendium Technical]]
*[[CZ:Templates]]
*[[CZ:MediaWiki customizations]]
*[[CZ:Buglist]]
|width="25%" valign="top"|


'''Note:''' only articles with the biology workgroup category tag will been seen in the recent changes for ''all biology articles'' (see header above).
===Development List===
|width="25%" valign="top"|


'''Launch area management: deferred'''  We should probably defer selection of discipline workgroup management until after more people in each area have arrived, and we have had a chance to finalize how this management will be selected.
===Mediawiki List===
|}
*[http://meta.wikimedia.org/wiki/Skins General skin help]
*[http://www.mediawiki.org/wiki/Manual:Skinning Skinning manual]
*[http://www.mediawiki.org/wiki/Manual:Skins Skins index]
*[http://www.mediawiki.org/wiki/Manual:Parameters_to_index.php Index parameters]
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|colspan=2|
|colspan="4" align="center"|'''<big>Objectives</big>'''
{|
| align="center" style="border: 1px solid darkblue; background-color:lightblue; margin-bottom: 3px;"| <big>'''Proposed subgroups'''</big>
|-
|-
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|valign="top"|
The organisation we inherited from Wikipedia is subdivided into ''disciplines within biology'', however,  we do not have to follow such a format. We can move forward with subgroups that seem more natural, and I imagine some subgroups will include several related disciplines. We can discuss this more on the [http://forum.citizendium.org/index.php/topic,260.0.html subgroups thread], in the biology forum, as we reach a critical mass of editors and authors.
 
Relevant lists and headers from Wikipedia are shown at the bottom of this section. Also, the list of high priority articles in the next section are currently categorized by discipline.
----
''[[List of biology disciplines]]''
{{biology-footer}}
|}
|}
 
==High priority tasks==
This list of tasks is not complete but it can be used as a starting point for new tasks or focusing our efforts.  Tasks in bold are regarded as a higher priority.  Those struck through are considered as low priority.
<div style="float:right; width:100%;" border="1" valign="top" border=1 >
<div style="float:left; width:48%;" valign="top" >
=== Biography ===
 
==={{pl|Anatomy}} ===
 
==={{pl|Biochemistry}}===
 
==={{pl|Botany}}===
</div>
<div style="float:right; width:48%;" valign="top" >
==={{pl|Cell biology}}===
 
==='''{{pl|Developmental biology}}'''===
 
==={{pl|Ecology}}===
 
==='''{{pl|Evolutionary biology}}'''===
 
==={{pl|Genetics}}===
 
==='''{{pl|Microbiology}}'''===
 
==={{pl|Molecular biology}}===
 
==={{pl|Neuroscience}}===
 
 
==={{pl|Physiology}}===
 
 
==='''{{pl|Taxonomy}}'''===
 
==='''{{pl|Virology}}'''===
 
==='''{{pl|Zoology}}'''===
</div></div>
 
==Core article==
The list below is adapted from the high priority articles above and the small list that has already started at [[CZ:Core_Articles#Biology]].  These are articles that we deem vital to get the biology section going.  Please add and delete from this list.  We are restricted to 198 articles that we think are needed now.
 
For a more comprehensive list search for the red links in the [[CZ:Biology_Workgroup/list]] or [[CZ:Biology_Workgroup/concepts]].


Just to clarify, I combined the list the concepts and the core article we already had.  I then edited for duplicates and removed items that did not seem to fit the core concept. We now have 300 articles. Feel free to add topics that are missing. Also feel free to group articles into topic related concepts, although this alphabetical list is probably OK for those wanting to see what is missing from CZ. [[User:Chris Day|Chris Day]] [[User talk:Chris Day|(talk)]] 16:33, 27 September 2007 (CDT)
===Major===
|valign="top"|


{{col-begin}}
===Minor===
{{col-break|width=33%}}
'''Lower priority'''
----


#{{pl|abiogenesis}}
|valign="top"|
#{{pl|acetyl CoA}}
#{{pl|acid}}
#{{pl|activation energy}}
#{{pl|adaptive landscapes}}
#{{pl|aerobic}}
#{{pl|autotroph}}
#{{pl|Biochemistry}}
#{{pl|biological emergence}}
#{{pl|blastula}}
#{{pl|Botany}}
#{{pl|carotenoid}}
#{{pl|carnivore}}
#{{pl|Cell biology}}
#{{pl|Cellular differentiation}}
#{{pl|Chi square test}}
#{{pl|chitin}}
#{{pl|Cladistics}}
#{{pl|Classical genetics}}
#{{pl|conformation}}
#{{pl|decomposer}}
#{{pl|Developmental biology}}
#{{pl|diffusion}}
#{{pl|dimer}}
#{{pl|DNA sequencing}}
#{{pl|epistasis}}
#{{pl|Ethology}}
#{{pl|Excretion}}
#{{pl|FADH2}}
#{{pl|gene pool}}
#{{pl|Genomics}}
#{{pl|glucose}}
#{{pl|Hershey-Chase experiment}}
#{{pl|housekeeping gene}}
#{{pl|hybrid}}
#{{pl|knock-out mouse}}
#{{pl|limnology}}
#{{pl|mass extinction}}
#{{pl|mass spectrometry}}
#{{pl|Molecular biology}}
#{{pl|niche}}
#{{pl|Nicotinamide adenine dinucleotide}}
#{{pl|non-competitive inhibition}}
#{{pl|nucleosome}}
#{{pl|peroxisome}}
#{{pl|phospholipid}}
#{{pl|pigment}}
#{{pl|Plant physiology}}
#{{pl|Plant tissues}}
#{{pl|plastid}}
#{{pl|primary structure}}
#{{pl|proteomics}}
#{{pl|punctuated equilibrium}}
#{{pl|purine}}
#{{pl|pyrimidine}}
#{{pl|quaternary structure}}
#{{pl|secondary structure}}
#{{pl|Southern blot}}
#{{pl|Systematics}}
#{{pl|taxis}}
#{{pl|Taxonomy}}
#{{pl|tertiary structure}}
#{{pl|twin}}
#{{pl|xanthophyll}}
#{{pl|Zoology}}
{{col-break|width=33%}}
'''Biographies'''
We may already have some of these under different spellings or without the middle name.
----
#{{pl|Alfred Russel Wallace}}
#{{pl|Ernst Haeckel}}
#{{pl|Francis Crick}}
#{{pl|Melvin Calvin}}
#{{pl|Hans Krebs}}
#{{pl|Fred Sanger}}
#{{pl|Linus Pauling}}
#{{pl|James Watson}}
#{{pl|Jean-Baptiste Lamarck}}
#{{pl|Konrad Lorenz}}
#{{pl|Max Delbrück}}
# [[Oswald T. Avery]] (DNA as the genetic material)
# [[Comte de Buffon]]


'''Organisms'''
===Requested===
----
#{{pl|algae}}
#{{pl|Ant}}
#{{pl|Arabidopsis thaliana}}
#{{pl|archaebacteria}}
#{{pl|Bryophyte}}
#{{pl|DNA virus}}
#{{pl|eubacteria}}
#{{pl|Escherichia coli}}
#{{pl|fungi}}
#{{pl|human}}
#{{pl|neurospora crassa}}
#{{pl|plant}}
#{{pl|retrovirus}}
#{{pl|RNA virus}}


{{col-break|width=33%}}
Math formulas written in TeX code have a white background on pages like [[Complex_number]]. Since our skin has a grey background it looks strange.
'''Already have these''':
Can we fix that bug?
Move these to the first column if they need a lot of work.
#{{pl|acetylcholine}}
#{{pl|Alexander Fleming}}
#{{pl|amino acid}}
#{{pl|anabolism}}
#{{pl|Anatomy}}
#{{pl|animal}}
#{{pl|Antonie_van_Leeuwenhoek}}
#{{pl|bacteria}}
#{{pl|Bioinformatics}}
#{{pl|biotechnology}}
#{{pl|cancer}}
#{{pl|catabolism}}
#{{pl|cell (biology)}}
#{{pl|Cellular respiration}}
#{{pl|Charles Darwin}}
#{{pl|circulatory system}}
#{{pl|citric acid cycle}}
#{{pl|cloning}}
#{{pl|cytoskeleton}}
#{{pl|dihybrid cross}}
#{{pl|DNA}}
#{{pl|Ecology}}
#{{pl|endosymbiotic theory}}
#{{pl|enzyme}}
#{{pl|Evolution}}
#{{pl|fermentation (biochemistry)}}
#{{pl|flower}}
#{{pl|Genetics}}
#{{pl|genotype}}
#{{pl|glycogen}}
#{{pl|histone}}
#{{pl|hormone}}
#{{pl|insect}}
#{{pl|insulin}}
#{{pl|kidney}}
#{{pl|life}}
#{{pl|Lipid}}
#{{pl|macromolecule}}
#{{pl|marine biology}}
#{{pl|microbiology}}
#{{pl|microfilament}}
#{{pl|mutation}}
#{{pl|natural selection}}
#{{pl|nervous system}}
#{{pl|neurotransmitter}}
#{{pl|organism}}
#{{pl|Physiology}}
#{{pl|plasma membrane}}
#{{pl|pollination}}
#{{pl|prion}}
#{{pl|Protein}}
#{{pl|species}}
#{{pl|stem cell}}
#{{pl|synapse}}
#{{pl|systems biology}}
#{{pl|transposon}}
#{{pl|Vasopressin}}
#{{pl|wood}}
#{{pl|x-ray diffraction }}
{{col-end}}


Bear in mind the Health Sciences Workgroup has 198, too, and there must not be overlap. --[[User:Larry Sanger|Larry Sanger]] 12:02, 27 September 2007 (CDT)
|valign="top"|
:Also note that the red links on the "already have" list are articles that are marked as externally sourced.  These may be included at [[CZ:Core Articles]] to be rewritten.[[User:Joe Quick|--Joe Quick]]  ([[User talk:Joe Quick|Talk]]) 18:53, 27 September 2007 (CDT)
===Completed===
 
==Tree-of-life subgroup==
A major part of the articles in the biology workgroup can be categorized under the concept of [[Tree of Life]]. All article about a species, genus or any other taxonomic level are part of this subgroup.
 
===Naming convention===
For others to decide
 
===Taxoboxes===
Taxoboxes facilitate the navigation through the Tree-of-Life and each taxon is required to have one using the [[:Template:Taxobox]].
 
==Major topics from wikipedia biology portal==
{|style="background: transparent;"
|-
! align=left valign=top| '''General'''
| align="left" style="vertical-align: top;"&nbsp;| <small> [[Life]]&nbsp;| [[species]]&nbsp;| [[biology]] </small>
|-
! align=left valign=top| [[Ecology]]
| align="left" style="vertical-align: top;"&nbsp;| <small> [[Biomass]]&nbsp;| [[food chain]]&nbsp;| [[indicator species]]&nbsp;| [[extinction]]&nbsp;| [[Habitat (ecology)|habitat]]&nbsp;| [[species distribution]]&nbsp;| [[Gaia theory (science)|Gaia theory]]</small>
|-
! align=left valign=top|  '''[[Conservation biology|Conservation]]'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[Biodiversity]]&nbsp;| [[biodiversity hotspot]]&nbsp;| [[nature reserve]]&nbsp;| [[edge effect]]&nbsp;| [[Allee effect]]&nbsp;| [[wildlife corridor|corridor]]&nbsp;| [[habitat fragmentation|fragmentation]]&nbsp;| [[pollution]]&nbsp;| [[invasive species]]&nbsp;| [[In-situ conservation|in&nbsp;situ]] - [[ex-situ conservation|ex&nbsp;situ]]&nbsp;| [[seedbank]]&nbsp;| [[environmental economics]] </small>
|-
! align=left valign=top| '''[[Evolution]]'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[Natural selection]]&nbsp;| [[genetic drift]]&nbsp;| [[sexual selection]]&nbsp;| [[speciation]]&nbsp;| [[mutation]]&nbsp;| [[gene flow]] </small>
|-
! align=left valign=top| '''Tree of life'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[Animal]]s&nbsp;| [[plant]]s&nbsp;| [[fungus|fungi]]&nbsp;| [[protist]]s&nbsp;| [[bacteria]]&nbsp;| [[archaea]]&nbsp;| [[prokaryote]]&nbsp;| [[eukaryote]]&nbsp;| [[three-domain system]]&nbsp;| [[angiosperm]]s&nbsp;| [[insect]]s&nbsp;| [[nematode]]s&nbsp;| [[virus]]es</small>
|-
! align=left valign=top|  '''[[Developmental biology|Development]]'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[Biological tissue|Tissues]]&nbsp;| [[fertilization]]&nbsp;| [[embryogenesis]]&nbsp;| [[gastrulation]]&nbsp;| [[neurulation]]&nbsp;| [[organogenesis]]&nbsp;| [[cellular differentiation|differentiation]]&nbsp;| [[morphogenesis]]&nbsp;| [[Metamorphosis (biology)|metamorphosis]]&nbsp;| [[ontogeny]]</small>
|-
! align=left valign=top|  '''[[Biological life cycle|Life cycle]]'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[Biological reproduction|reproduction]]&nbsp;| [[ploidy]]&nbsp;| [[spermatogenesis]]&nbsp;| [[alternation of generations]]&nbsp;| [[oogenesis]]&nbsp;| [[parasitism]]&nbsp;| [[evolution of sex]]&nbsp;| [[meiosis]]&nbsp;| [[DNA replication]] </small>
|-
|-
! align=left valign=top|  '''The [[cell (biology)|cell]]'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[Cell wall]]&nbsp;| [[cell membrane]]&nbsp;| [[cytoskeleton]]&nbsp;| [[mitochondrion]]&nbsp;| [[chloroplast]]&nbsp;| [[cell nucleus|nucleus]]&nbsp;| [[endoplasmic reticulum]]&nbsp;| [[Golgi apparatus]]&nbsp;| [[cell cycle]]&nbsp;| [[mitosis]]&nbsp;| [[metabolism]]&nbsp;| [[cell signaling]]&nbsp;| [[protein targeting]]</small>
|-
! align=left valign=top|  '''[[Biochemistry]]'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[DNA]]&nbsp;| [[RNA]]&nbsp;| [[protein]]&nbsp;| [[enzyme]]&nbsp;| [[protein folding]]&nbsp;| [[carbohydrate]]&nbsp;| [[lipid]]&nbsp;| [[glycolysis]]&nbsp;| [[citric acid cycle]]&nbsp;| [[electron transport chain]]&nbsp;| [[oxidative phosphorylation]]&nbsp;| [[photosynthesis]]&nbsp;| [[protein structure]] </small>
|-
! align=left valign=top|  '''[[Genetics]]'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[Gene]]&nbsp;| [[genome]]&nbsp;| [[karyotype]]&nbsp;| [[transcription]]&nbsp;| [[translation]]&nbsp;| [[genetic recombination|recombination]]&nbsp;| [[chromosome]]&nbsp;| [[Mendelian inheritance]]&nbsp;| [[phenotype]]&nbsp;| [[genotype]]&nbsp;| [[epigenetics]]&nbsp;| [[Splicing (genetics)|splicing]]&nbsp;| [[mutation]]&nbsp;| [[genetic fingerprint]]&nbsp;| [[chromatin]]&nbsp;| [[classical genetics]]&nbsp;| [[ecological genetics]]&nbsp;| [[molecular genetics]]&nbsp;| [[population genetics]]&nbsp;| [[quantitative genetics]] </small>
|-
! align=left valign=top| '''Techniques'''
| valign=top| <small>[[Genetic engineering]]&nbsp;| [[transformation (genetics)|transformation]]&nbsp;| [[gel electrophoresis]]&nbsp;| [[chromatography]]&nbsp;| [[centrifugation]]&nbsp;| [[cell culture]]&nbsp;| [[DNA sequencing]]&nbsp;| [[DNA microarray]]&nbsp;| [[green flourescent protein]]&nbsp;| [[Vector (biology)|vector]]&nbsp;| [[Enzyme assay]]&nbsp;| [[Protein purification]]&nbsp;| [[Western blot]]&nbsp;| [[Northern blot]]&nbsp;| [[Southern blot]]&nbsp;| [[restriction enzyme]]&nbsp;| [[polymerase chain reaction]]&nbsp;| [[two-hybrid screening]] </small>
|-
! align=left valign=top|  '''Other fields'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[Anatomy]]&nbsp;| [[astrobiology]]&nbsp;| [[botany]]&nbsp;|  [[bioengineering]]&nbsp;| [[bioinformatics]]&nbsp;| [[human biology]]&nbsp;| [[microbiology]]&nbsp;| [[origin of life]]&nbsp;| [[paleontology]]&nbsp;| [[parasitology]]&nbsp;| [[pathology]]&nbsp;| [[pharmacology]]&nbsp;| [[phylogenetics]]&nbsp;| [[physiology]]&nbsp;| [[marine biology]]&nbsp;|  [[systems biology]]&nbsp;| [[alpha taxonomy|taxonomy]]&nbsp;| [[zoology]] </small>
|-
! align=left valign=top| '''Classification&nbsp;of&nbsp;man'''
| align="left" style="vertical-align: top;"&nbsp;| <small>[[Primate]]&nbsp;| [[mammal]]&nbsp;| [[vertebrate]]&nbsp;| [[craniata]]&nbsp;| [[chordate]]&nbsp;| [[deuterostome]]&nbsp;| [[animal]] </small>
|-
! align=left valign=top| [[History of biology]]
|align="left" style="vertical-align: top;"&nbsp;| <small> [[Natural history]]&nbsp;| [[History of geography|geography]]&nbsp;| [[History of ecology|ecology]]&nbsp;| [[History of molecular biology|molecular biology]]&nbsp;| [[History of evolutionary thought|evolutionary biology]]&nbsp;| [[Great Chain of Being]] </small>
|}
|}
{{Technical Help}}

Latest revision as of 13:55, 27 December 2022

See also: CZ:Technical and CZ:Technical Help

Citizendium's technical staff are responsible for making changes and updates to the wiki software and the servers that host the project.

To contact staff off-site, please use the email below.

Please send email to manager A T citizendium.org . .


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The Citizendium is run by a collection of volunteers. Pat Palmer is working with an Advisory Team on policy, goals and membership and is handling new account requests, and User:Sergei Chekanov upgraded the software in March 2022; at the same time as the software upgrade, hardware was also upgraded to include SSD drives and a faster processor.

Until 2021, Francisco Reyes and Joshua Sadule worked (along with occasional assistance from others) towards upgrading the server and outdated wiki software, and generously handled many repairs and backups.

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Math formulas written in TeX code have a white background on pages like Complex_number. Since our skin has a grey background it looks strange. Can we fix that bug?

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